PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772389.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 848aa    MW: 96062.9 Da    PI: 8.3843
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.75.2e-25107213190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwev 78 
                     +fY+eYAk++GF   +++s++s+ +g +++++fvCs++g+++e +++                 ++k r +r+ ++t+Cka+l+vk+++dg+w +
  XP_009772389.1 107 SFYKEYAKSIGFFSIIKASRRSRISGIFIDAKFVCSRYGSKQEPSTSvtepvpsadgagsipvrRKKGRINRSWSKTDCKACLHVKRRSDGRWII 201
                     5******************************************9999***************99999999************************* PP

            FAR1  79 tkleleHnHela 90 
                      ++++eHnHe +
  XP_009772389.1 202 RTFVKEHNHETF 213
                     *********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-22107213IPR004330FAR1 DNA binding domain
PfamPF105518.6E-29331425IPR018289MULE transposase domain
PROSITE profilePS5096610.41611647IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-7617646IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6622649IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MNGRVSGTRL TTWIGGTHLT SMVIDLEHPS GDQHKEKEDC GHHICGATAT ASKSVCLDRG  60
NAGPSWNEGT SNGTYILPNA DSLAVNCYRG LEPHDGMEFD SKEDAFSFYK EYAKSIGFFS  120
IIKASRRSRI SGIFIDAKFV CSRYGSKQEP STSVTEPVPS ADGAGSIPVR RKKGRINRSW  180
SKTDCKACLH VKRRSDGRWI IRTFVKEHNH ETFPDRTNYL RGHRNTDLGK NGADAFHSIC  240
GRTKKTYVTM SRQSGVMKKV EKQKNVGTKS SPQSLALDEG DAQVMLEHFL YMQDENPNFF  300
YAMDLNQEQR LRNVFWVDAK GRIDYSNFSD VVLVDTTYIK NDYKLHFVPF IGVNHHCQSI  360
LLGCGLIANE SKSTFVWLMR AWLRAMGGQA PKVILTDQDN TLEEVIAEVL PDCCHCFCLW  420
HVLSNIQEKL GHVIRQHEDF LSKFNKCILR SATNELFEKR WWKVVDRFDL RNDLWIKSLY  480
KDRLRWVPTF MNNIFLAGMS TMQRSESVSS LLEKCMLCRT TLKEFLDQYK KLLREKCQEE  540
ASADSETRHK QPGLKSPSPF EKQMSTLYTH TIFKKFQAQV LGVVACHPKK ESDDGAAATY  600
RVQDFEENQE FVVVRSEKTS DASCSCHLFE YNGFLCRHVM IVLQMAGVHN IPSKYILSRW  660
TKGAKSREKM REVNLVDSRV QRYNDLCQRA FELGDEGSLS QESYNIVFNA LENFLRRCEA  720
VNDPNLNESE PCFPKNQVFI DGNNPSKSNG KNIARKEKVG QSGLGEPTVD YPFQSHSAMQ  780
PMGQINARFP APGGYYSSPQ IIQGVGQLNT NIQAYGNQPN MPGLGQLNTI ASIADCPYLS  840
QPTFHGLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772389.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X10
SwissprotQ9SWG30.0FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLK4B7I70.0K4B7I7_SOLLC; Uncharacterized protein
STRINGSolyc02g068550.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein